HuBMAP metadata documentation and submission specifications. Please refer to the HuBMAP Data Upload Guidelines for the latest assay metadata options and specifications. The Ingest Validation Tools repository is used to maintain the Data Upload Guidelines.
Link to the current version of the Data Submission Guide PDF. See section 10 of the Guide for details on transferring metadata to the HIVE.
- This Specification has been replaced by the individual Block, Section, and Suspension specifications below. For more details please review this document.
- 10x Multiome
- AF (Autofluorescence)
- Antibody-based MxIF (Multiplexed Immunofluorescence)
- Body CT
- Cell DIVE
- Enhanced SRS
- hrsTP-seq (DBiTSeq)
- IMC (Imaging Mass Cytometry)
- Light Sheet
- MALDI-IMS (neg and pos modes - Matrix Assisted Laser Desorption Ionization Imaging Mass Spectrometry)
- Molecular Cartography
- Micro CT
- PAS (histological stain)
- Second Harmonic Generation
- Thick Section Multiphoton MxIF